Publications and theses

Publications and theses

Publications

Orozco, G.A., Tanska, P., Mononen, M.E., Halonen, K.S., Korhonen, R.K. “The effect of constitutive representations and structural constituents of ligaments on knee joint mechanics”. Sci. Rep. 8, pp. 2323, 2018

Orozco, G.A., Tanska, P., Florea, C., Grodzinsky, A.J., Korhonen, R.K. “A novel mechanobiological model can predict how physiologically relevant dynamic loading causes proteoglycan loss in mechanically injured articular cartilage”. Sci. Rep. 8, pp. 15599, 2018

Huang, Y., Nguyen, M.-K., Natarajan, A.K., Nguyen, V.H., Kuzyk, A. “A DNA Origami-Based Chiral Plasmonic Sensing Device”, ACS Applied Materials and Interfaces, 10(51), pp. 44221-44225, 2018

Niemelä, M., Kangas, M., Farrahi, V., Kiviniemi, A., Leinonen, A.-M., Ahola, R., Puukka, K., Auvinen, J., Korpelainen, R., Jämsä, T. “Intensity and temporal patterns of physical activity and cardiovascular disease risk in midlife”, Preventive Medicine, 124, pp. 33-41, 2019

Farrahi, V., Niemelä, M., Kangas, M., Korpelainen, R., Jämsä, T. “Calibration and validation of accelerometer-based activity monitors: A systematic review of machine-learning approaches”, Gait and Posture, 68, pp. 285-299, 2019

Huang, Y., Nguyen, M.-K., Kuzyk, A. “Assembly of Gold Nanorods into Chiral Plasmonic Metamolecules Using DNA Origami Templates”, Journal of visualized experiments : JoVE, (145), 2019

Huang, L., Korhonen, R.K., Turunen, M.J., Finnilä, M.A.J. “Experimental mechanical strain measurement of tissues”, PeerJ, 2019 (3), art. no. e6545, 2019

Kok, J., Širka, A., Grassi, L., Raina, D.B., Tarasevičius, Š., Tägil, M., Lidgren, L., Isaksson, H. “Fracture strength of the proximal femur injected with a calcium sulfate/hydroxyapatite bone substitute”, Clinical Biomechanics, 63, pp. 172-178, 2019

Notermans, T., Khayyeri, H., Isaksson, H. “Understanding how reduced loading affects Achilles tendon mechanical properties using a fibre-reinforced poro-visco-hyper-elastic model”, Journal of the Mechanical Behavior of Biomedical Materials, 96, pp. 301-309, 2019

Nguyen, D.T.A., Rissanen, S.M., Julkunen, P., Kallioniemi, E., Karjalainen, P.A., “Principal Component Regression on Motor Evoked Potential in Single-Pulse Transcranial Magnetic Stimulation“, IEEE Transactions on Neural Systems and Rehabilitation Engineering, 27 (8), pp. 1521-1528, 2019

Marzetti, L., Basti, A., Chella, F., Andrea, A.D., Syrjälä, J., Pizzella, V., ”Brain Functional Connectivity Through Phase Coupling of Neuronal Oscillations: A Perspective From Magnetoencephalography”, Front. Neurosci., 13, pp. 1-21, 2019

Smeds, L., Takeshita, D., Turunen, T., Tiihonen, J., Westö, J., Martyniuk, N., Seppänen, A., Ala-Laurila, P., ”Paradoxical Rules of Spike Train Decoding Revealed at the Sensitivity Limit of Vision.”, Neuron, 104 (3), pp. 576-587, 2019

Niemelä, M., Kiviniemi, A., Kangas, M., Farrahi, V., Leinonen, A., Ahola, R., Tammelin, T., Auvinen, J., Korpelainen, R., Jämsä, T., “Prolonged bouts of sedentary time and cardiac autonomic function in midlife”, Transl Sports Med, 2, pp. 341-350, 2019

Farrahi, V., Niemelä, M., Tjurin, P., Kangas, M., Korpelainen, R., Jämsä, T., “Evaluating and Enhancing the Generalization Performance of Machine Learning Models for Physical Activity Intensity Prediction From Raw Acceleration Data.”, IEEE J Biomed Health Inform., 24(1), pp. 27-38, 2020

Jones, J.M., Player, D.J., Samanta, S., Rangasami, V.K., Hilborn, J., Lewis, M.P., Oommen, O.P., Mudera V., “Hyaluronan derived nanoparticle for simvastatin delivery: evaluation of simvastatin induced myotoxicity in tissue engineered skeletal muscle”, Biomater. Sci., 8, pp. 302-31, 2020

Esrafilian, A., Stenroth, L., Mononen, M., Tanska, P., Avela, J., Korhonen, R.K., “EMG-Assisted Fibril-Reinforced Poroviscoelastic Finite Element Model of the Knee Joint”, Scientific Reports, 10, pp. 1–16, 2020

Das Gupta, S., Finnilä, M.A.J., Karhula, S.S., Kauppinen, S., Joukainen, A., Kröger, H., Korhonen, R.K., Thambyah, A., Rieppo, L., Saarakkala, S., ”Raman microspectroscopic analysis of the tissue-specific composition of the human osteochondral junction in osteoarthritis: A pilot study”, Acta Biomater, 106, pp. 145-155, 2020

Farrahi V., Niemelä M., Kärmeniemi M., Puhakka S., Kangas M., Korpelainen R., Jämsä T., “Correlates of physical activity behavior in adults: a data mining approach.”, Int J Behav Nutr Phys Act, 17(1), pp. 94, 2020

Eskelinen A.S.A., Tanska P., Florea C., Orozco G.A., Julkunen P., Grodzinsky A.J., Korhonen R.K., “Mechanobiological model for simulation of injured cartilage degradation via pro-inflammatory cytokines and mechanical stimulus”, PLoS Comput Biol, 16(6), e1007998, 2020

Orozco G.A., Bolcos P., Mohammadi A., Tanaka M.S., Yang M., Link T.M., Ma B., Li X., Tanska P., Korhonen R.K., “Prediction of local fixed charge density loss in cartilage following ACL injury and reconstruction: A computational proof-of-concept study with MRI follow-up.”, J Orthop Res., 2020 Jul 8.

Farrahi V., Kangas M., Walmsley R., Niemelä M., Kiviniemi A., Puukka K., Collings P.J., Korpelainen R., Jämsä T., “Compositional associations of sleep and activities within the 24-h cycle with cardiometabolic health markers in adults.”, Med Sci Sports Exerc., Aug 5., 2020

Theses

Gustavo Orozco: Mechanobiological modeling of articular cartilage: predicting post-traumatic knee osteoarthritis