Publications and theses
Publications
Orozco, G.A., Tanska, P., Mononen, M.E., Halonen, K.S., Korhonen, R.K. “The effect of constitutive representations and structural constituents of ligaments on knee joint mechanics”. Sci. Rep. 8, pp. 2323, 2018
Orozco, G.A., Tanska, P., Florea, C., Grodzinsky, A.J., Korhonen, R.K. “A novel mechanobiological model can predict how physiologically relevant dynamic loading causes proteoglycan loss in mechanically injured articular cartilage”. Sci. Rep. 8, pp. 15599, 2018
Huang, Y., Nguyen, M.-K., Natarajan, A.K., Nguyen, V.H., Kuzyk, A. “A DNA Origami-Based Chiral Plasmonic Sensing Device”, ACS Applied Materials and Interfaces, 10(51), pp. 44221-44225, 2018
Niemelä, M., Kangas, M., Farrahi, V., Kiviniemi, A., Leinonen, A.-M., Ahola, R., Puukka, K., Auvinen, J., Korpelainen, R., Jämsä, T. “Intensity and temporal patterns of physical activity and cardiovascular disease risk in midlife”, Preventive Medicine, 124, pp. 33-41, 2019
Farrahi, V., Niemelä, M., Kangas, M., Korpelainen, R., Jämsä, T. “Calibration and validation of accelerometer-based activity monitors: A systematic review of machine-learning approaches”, Gait and Posture, 68, pp. 285-299, 2019
Huang, Y., Nguyen, M.-K., Kuzyk, A. “Assembly of Gold Nanorods into Chiral Plasmonic Metamolecules Using DNA Origami Templates”, Journal of visualized experiments : JoVE, (145), 2019
Huang, L., Korhonen, R.K., Turunen, M.J., Finnilä, M.A.J. “Experimental mechanical strain measurement of tissues”, PeerJ, 2019 (3), art. no. e6545, 2019
Kok, J., Širka, A., Grassi, L., Raina, D.B., Tarasevičius, Š., Tägil, M., Lidgren, L., Isaksson, H. “Fracture strength of the proximal femur injected with a calcium sulfate/hydroxyapatite bone substitute”, Clinical Biomechanics, 63, pp. 172-178, 2019
Notermans, T., Khayyeri, H., Isaksson, H. “Understanding how reduced loading affects Achilles tendon mechanical properties using a fibre-reinforced poro-visco-hyper-elastic model”, Journal of the Mechanical Behavior of Biomedical Materials, 96, pp. 301-309, 2019
Nguyen, D.T.A., Rissanen, S.M., Julkunen, P., Kallioniemi, E., Karjalainen, P.A., “Principal Component Regression on Motor Evoked Potential in Single-Pulse Transcranial Magnetic Stimulation“, IEEE Transactions on Neural Systems and Rehabilitation Engineering, 27 (8), pp. 1521-1528, 2019
Marzetti, L., Basti, A., Chella, F., Andrea, A.D., Syrjälä, J., Pizzella, V., ”Brain Functional Connectivity Through Phase Coupling of Neuronal Oscillations: A Perspective From Magnetoencephalography”, Front. Neurosci., 13, pp. 1-21, 2019
Smeds, L., Takeshita, D., Turunen, T., Tiihonen, J., Westö, J., Martyniuk, N., Seppänen, A., Ala-Laurila, P., ”Paradoxical Rules of Spike Train Decoding Revealed at the Sensitivity Limit of Vision.”, Neuron, 104 (3), pp. 576-587, 2019
Niemelä, M., Kiviniemi, A., Kangas, M., Farrahi, V., Leinonen, A., Ahola, R., Tammelin, T., Auvinen, J., Korpelainen, R., Jämsä, T., “Prolonged bouts of sedentary time and cardiac autonomic function in midlife”, Transl Sports Med, 2, pp. 341-350, 2019
Farrahi, V., Niemelä, M., Tjurin, P., Kangas, M., Korpelainen, R., Jämsä, T., “Evaluating and Enhancing the Generalization Performance of Machine Learning Models for Physical Activity Intensity Prediction From Raw Acceleration Data.”, IEEE J Biomed Health Inform., 24(1), pp. 27-38, 2020
Jones, J.M., Player, D.J., Samanta, S., Rangasami, V.K., Hilborn, J., Lewis, M.P., Oommen, O.P., Mudera V., “Hyaluronan derived nanoparticle for simvastatin delivery: evaluation of simvastatin induced myotoxicity in tissue engineered skeletal muscle”, Biomater. Sci., 8, pp. 302-31, 2020
Esrafilian, A., Stenroth, L., Mononen, M., Tanska, P., Avela, J., Korhonen, R.K., “EMG-Assisted Fibril-Reinforced Poroviscoelastic Finite Element Model of the Knee Joint”, Scientific Reports, 10, pp. 1–16, 2020
Das Gupta, S., Finnilä, M.A.J., Karhula, S.S., Kauppinen, S., Joukainen, A., Kröger, H., Korhonen, R.K., Thambyah, A., Rieppo, L., Saarakkala, S., ”Raman microspectroscopic analysis of the tissue-specific composition of the human osteochondral junction in osteoarthritis: A pilot study”, Acta Biomater, 106, pp. 145-155, 2020
Farrahi V., Niemelä M., Kärmeniemi M., Puhakka S., Kangas M., Korpelainen R., Jämsä T., “Correlates of physical activity behavior in adults: a data mining approach.”, Int J Behav Nutr Phys Act, 17(1), pp. 94, 2020
Eskelinen A.S.A., Tanska P., Florea C., Orozco G.A., Julkunen P., Grodzinsky A.J., Korhonen R.K., “Mechanobiological model for simulation of injured cartilage degradation via pro-inflammatory cytokines and mechanical stimulus”, PLoS Comput Biol, 16(6), e1007998, 2020
Orozco G.A., Bolcos P., Mohammadi A., Tanaka M.S., Yang M., Link T.M., Ma B., Li X., Tanska P., Korhonen R.K., “Prediction of local fixed charge density loss in cartilage following ACL injury and reconstruction: A computational proof-of-concept study with MRI follow-up.”, J Orthop Res., 2020 Jul 8.
Farrahi V., Kangas M., Walmsley R., Niemelä M., Kiviniemi A., Puukka K., Collings P.J., Korpelainen R., Jämsä T., “Compositional associations of sleep and activities within the 24-h cycle with cardiometabolic health markers in adults.”, Med Sci Sports Exerc., Aug 5., 2020
Theses
Gustavo Orozco: Mechanobiological modeling of articular cartilage: predicting post-traumatic knee osteoarthritis