{"id":142,"date":"2020-10-20T16:12:19","date_gmt":"2020-10-20T13:12:19","guid":{"rendered":"https:\/\/sites.uef.fi\/tarja-malm-group\/?page_id=142"},"modified":"2025-01-18T12:29:16","modified_gmt":"2025-01-18T10:29:16","slug":"publications","status":"publish","type":"page","link":"https:\/\/sites.uef.fi\/tarja-malm-group\/publications\/","title":{"rendered":"PUBLICATIONS"},"content":{"rendered":"

SELECTED PUBLICATIONS<\/h4>\n
    \n
  1. StellarPath: Hierarchical-vertical multi-omics classifier synergizes stable markers and interpretable similarity networks for patient profiling.<\/a> Giudice L, Mohamed A,\u00a0Malm T.<\/strong>PLoS Comput Biol. 2024 Apr 12;20(4):e1012022. doi: 10.1371\/journal.pcbi.1012022. eCollection 2024 Apr.PMID:\u00a038607982\u00a0Free PMC article.<\/strong><\/li>\n
  2. ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling.<\/a> Scoyni F, Sitnikova V, Giudice L, Korhonen P, Trevisan DM, Hernandez de Sande A, Gomez-Budia M, Giniatullina R, Ugidos IF, Dhungana H, Pistono C, Korvenlaita N, V\u00e4lim\u00e4ki NN, Kangas SM, Hiltunen AE, Gribchenko E, Kaikkonen-M\u00e4\u00e4tt\u00e4 MU, Koistinaho J, Yl\u00e4-Herttuala S, Hinttala R, Ven\u00f8 MT, Su J, Stoffel M, Schaefer A, Rajewsky N, Kjems J, LaPierre MP, Piwecka M, Jolkkonen J, Giniatullin R, Hansen TB,\u00a0Malm T.<\/strong>Cell Rep. 2024 Mar 26;43(3):113862. doi: 10.1016\/j.celrep.2024.113862. Epub 2024 Mar 5.PMID:\u00a038446664\u00a0Free article.<\/strong><\/li>\n
  3. Alzheimer’s disease-induced phagocytic microglia express a specific profile of coding and non-coding RNAs.<\/a> Scoyni F, Giudice L, V\u00e4\u00e4n\u00e4nen MA, Downes N, Korhonen P, Choo XY, V\u00e4lim\u00e4ki NN, M\u00e4kinen P, Korvenlaita N, Rozemuller AJ, de Vries HE, Polo J, Turunen TA, Yl\u00e4-Herttuala S, Hansen TB, Grubman A, Kaikkonen MU,\u00a0Malm T.<\/strong>Alzheimers Dement. 2024 Feb;20(2):954-974. doi: 10.1002\/alz.13502. Epub 2023 Oct 12.PMID:\u00a037828821\u00a0Free PMC article.<\/strong><\/li>\n
  4. Human iPSC-derived microglia carrying the LRRK2-G2019S mutation show a Parkinson’s disease related transcriptional profile and function.<\/a> Ohtonen S, Giudice L, J\u00e4ntti H, Fazaludeen MF, Shakirzyanova A, G\u00f3mez-Budia M, V\u00e4lim\u00e4ki NN, Niskanen J, Korvenlaita N, Fagerlund I, Koistinaho J, Amiry-Moghaddam M, Savchenko E, Roybon L, Lehtonen \u0160, Korhonen P,\u00a0Malm T.<\/strong>Sci Rep. 2023 Dec 13;13(1):22118. doi: 10.1038\/s41598-023-49294-9.PMID:\u00a038092815\u00a0Free PMC article.<\/strong><\/li>\n
  5. Dynamic release of neuronal extracellular vesicles containing miR-21a-5p is induced by hypoxia.<\/a> Korvenlaita N, G\u00f3mez-Budia M, Scoyni F, Pistono C, Giudice L, Eamen S, Loppi S, de Sande AH, Huremagic B, Bouvy-Liivrand M, Hein\u00e4niemi M, Kaikkonen MU, Cheng L, Hill AF, Kanninen KM, Jenster GW, van Royen ME, Ramiro L, Montaner J, Batkova T, Mikulik R, Giugno R, Jolkkonen J, Korhonen P,\u00a0Malm T.<\/strong>J Extracell Vesicles. 2023 Jan;12(1):e12297. doi: 10.1002\/jev2.12297.PMID:\u00a036594832\u00a0Free PMC article.<\/strong><\/li>\n
  6. Microglial amyloid beta clearance is driven by PIEZO1 channels.<\/a> J\u00e4ntti H, Sitnikova V, Ishchenko Y, Shakirzyanova A, Giudice L, Ugidos IF, G\u00f3mez-Budia M, Korvenlaita N, Ohtonen S, Belaya I, Fazaludeen F, Mikhailov N, Gotkiewicz M, Ketola K, Lehtonen \u0160, Koistinaho J, Kanninen KM, Hern\u00e1ndez D, P\u00e9bay A, Giugno R, Korhonen P, Giniatullin R,\u00a0Malm T.<\/strong>J Neuroinflammation. 2022 Jun 15;19(1):147. doi: 10.1186\/s12974-022-02486-y.PMID:\u00a035706029\u00a0Free PMC article.<\/strong><\/li>\n
  7. Sex Differences in Poststroke Inflammation: a Focus on Microglia Across the Lifespan.<\/a> Ugidos IF, Pistono C, Korhonen P, G\u00f3mez-Budia M, Sitnikova V, Klecki P, Stanov\u00e1 I, Jolkkonen J,\u00a0Malm T.<\/strong> 2022 May;53(5):1500-1509. doi: 10.1161\/STROKEAHA.122.039138. Epub 2022 Apr 25.PMID:\u00a035468000\u00a0Review.<\/li>\n
  8. Microglia-like Cells Promote Neuronal Functions in Cerebral Organoids.<\/a> Fagerlund I, Dougalis A, Shakirzyanova A, G\u00f3mez-Budia M, Pelkonen A, Konttinen H, Ohtonen S, Fazaludeen MF, Koskuvi M, Kuusisto J, Hern\u00e1ndez D, Pebay A, Koistinaho J, Rauramaa T, Lehtonen \u0160, Korhonen P,\u00a0Malm T.<\/strong> 2021 Dec 30;11(1):124. doi: 10.3390\/cells11010124.PMID:\u00a035011686\u00a0Free PMC article.<\/strong><\/li>\n
  9. Functional Characterization of Human Pluripotent Stem Cell-Derived Models of the Brain with Microelectrode Arrays.<\/a> Pelkonen A, Pistono C, Klecki P, G\u00f3mez-Budia M, Dougalis A, Konttinen H, Stanov\u00e1 I, Fagerlund I, Leinonen V, Korhonen P,\u00a0Malm T.<\/strong> 2021 Dec 29;11(1):106. doi: 10.3390\/cells11010106.PMID:\u00a035011667\u00a0Free PMC article.<\/strong>Review.<\/li>\n
  10. Glia-Derived Extracellular Vesicles: Role in Central Nervous System Communication in Health and Disease.<\/a> Pistono C, Bister N, Stanov\u00e1 I,\u00a0Malm T.<\/strong>Front Cell Dev Biol. 2021 Jan 25;8:623771. doi: 10.3389\/fcell.2020.623771. eCollection 2020.PMID:\u00a033569385\u00a0Free PMC article.<\/strong><\/li>\n
  11. Peripheral inflammation preceeding ischemia impairs neuronal survival through mechanisms involving miR-127 in aged animals.<\/a> Loppi S, Korhonen P, Bouvy-Liivrand M, Caligola S, Turunen TA, Turunen MP, Hernandez de Sande A, Ko\u0142osowska N, Scoyni F, Rosell A, Garc\u00eda-Berrocoso T, Lemarchant S, Dhungana H, Montaner J, Koistinaho J, Kanninen KM, Kaikkonen MU, Giugno R, Hein\u00e4niemi M,\u00a0Malm T.<\/strong>Aging Cell. 2021 Jan;20(1):e13287. doi: 10.1111\/acel.13287. Epub 2020 Dec 28.PMID:\u00a033369048\u00a0Free PMC article.<\/strong><\/li>\n
  12. Hypoxia and extracellular vesicles: A review on methods, vesicular cargo and functions.<\/a> Bister N, Pistono C, Huremagic B, Jolkkonen J, Giugno R,\u00a0Malm T.<\/strong>J Extracell Vesicles. 2020 Oct;10(1):e12002. doi: 10.1002\/jev2.12002. Epub 2020 Nov 14.PMID:\u00a033304471\u00a0Free PMC article.<\/strong><\/li>\n
  13. Intracerebral overexpression of miR-669c is protective in mouse ischemic stroke model by targeting MyD88 and inducing alternative microglial\/macrophage activation.<\/a> Kolosowska N, Gotkiewicz M, Dhungana H, Giudice L, Giugno R, Box D, Huuskonen MT, Korhonen P, Scoyni F, Kanninen KM, Yl\u00e4-Herttuala S, Turunen TA, Turunen MP, Koistinaho J,\u00a0Malm T.<\/strong>J Neuroinflammation. 2020 Jun 19;17(1):194. doi: 10.1186\/s12974-020-01870-w.PMID:\u00a032560730\u00a0Free PMC article.<\/strong><\/li>\n
  14. Glial smog: Interplay between air pollution and astrocyte-microglia interactions.<\/a> G\u00f3mez-Budia M, Konttinen H, Saveleva L, Korhonen P, Jalava PI, Kanninen KM,\u00a0Malm T.<\/strong>Neurochem Int. 2020 Jun;136:104715. doi: 10.1016\/j.neuint.2020.104715. Epub 2020 Mar 10.PMID:\u00a032169588\u00a0Free article.<\/strong><\/li>\n
  15. PSEN1\u0394E9, APPswe, and APOE4 Confer Disparate Phenotypes in Human iPSC-Derived Microglia.<\/a> Konttinen H, Cabral-da-Silva MEC, Ohtonen S, Wojciechowski S, Shakirzyanova A, Caligola S, Giugno R, Ishchenko Y, Hern\u00e1ndez D, Fazaludeen MF, Eamen S, Budia MG, Fagerlund I, Scoyni F, Korhonen P, Huber N, Haapasalo A, Hewitt AW, Vickers J, Smith GC, Oksanen M, Graff C, Kanninen KM, Lehtonen S, Propson N, Schwartz MP, P\u00e9bay A, Koistinaho J, Ooi L,\u00a0Malm T.<\/strong>Stem Cell Reports. 2019 Oct 8;13(4):669-683. doi: 10.1016\/j.stemcr.2019.08.004. Epub 2019 Sep 12.PMID:\u00a031522977\u00a0Free PMC article.<\/strong><\/li>\n
  16. Loss of Cln5 leads to altered Gad1 expression and deficits in interneuron development in mice.<\/a> Singh Y, Leinonen H, Fazaludeen F, Jaronen M, Guest D, Buckley N, Byts N, Oksa P, Jalkanen K, Iqbal I, Huuskonen M, Savchenko E, Keksa-Goldsteine V, Chew S, Myllyharju J, Tanila H, Ooi L, Koistinaho J, Kanninen KM,\u00a0Malm T.<\/strong>Hum Mol Genet. 2019 Oct 1;28(19):3309-3322. doi: 10.1093\/hmg\/ddz165.PMID:\u00a031294445<\/li>\n
  17. Long-term interleukin-33 treatment delays disease onset and alleviates astrocytic activation in a transgenic mouse model of amyotrophic lateral sclerosis.<\/a> Korhonen P, Pollari E, Kanninen KM, Savchenko E, Lehtonen \u0160, Wojciechowski S, Pomeshchik Y, Van Den Bosch L, Goldsteins G, Koistinaho J,\u00a0Malm T.<\/strong>IBRO Rep. 2019 Jan 11;6:74-86. doi: 10.1016\/j.ibror.2019.01.005. eCollection 2019 Jun.PMID:\u00a030705990\u00a0Free PMC article.<\/strong><\/li>\n
  18. PPAR\u03b2\/\u03b4-agonist GW0742 ameliorates dysfunction in fatty acid oxidation in PSEN1\u0394E9 astrocytes.<\/a> Konttinen H, Gureviciene I, Oksanen M, Grubman A, Loppi S, Huuskonen MT, Korhonen P, Lampinen R, Keuters M, Belaya I, Tanila H, Kanninen KM, Goldsteins G, Landreth G, Koistinaho J,\u00a0Malm T.<\/strong> 2019 Jan;67(1):146-159. doi: 10.1002\/glia.23534. Epub 2018 Nov 19.PMID:\u00a030453390\u00a0Free PMC article.<\/strong><\/li>\n
  19. Sulfosuccinimidyl oleate sodium is neuroprotective and alleviates stroke-induced neuroinflammation.<\/a> Dhungana H, Huuskonen MT, Jaronen M, Lemarchant S, Ali H, Keksa-Goldsteine V, Goldsteins G, Kanninen KM, Koistinaho J,\u00a0Malm T.<\/strong>J Neuroinflammation. 2017 Dec 4;14(1):237. doi: 10.1186\/s12974-017-1010-7.PMID:\u00a029202856\u00a0Free PMC article.<\/strong><\/li>\n
  20. Multitasking Microglia and Alzheimer’s Disease: Diversity, Tools and Therapeutic Targets.<\/a> Grubman A, Kanninen KM,\u00a0Malm T.<\/strong>J Mol Neurosci. 2016 Nov;60(3):390-404. doi: 10.1007\/s12031-016-0825-5. Epub 2016 Sep 22.PMID:\u00a027660215\u00a0Review.<\/li>\n
  21. Exosomes as new diagnostic tools in CNS diseases.<\/a> Kanninen KM, Bister N, Koistinaho J,\u00a0Malm T.<\/strong>Biochim Biophys Acta. 2016 Mar;1862(3):403-10. doi: 10.1016\/j.bbadis.2015.09.020. Epub 2015 Oct 20.PMID:\u00a026432482\u00a0Free article.<\/strong>No abstract available.<\/li>\n
  22. Exosomes in cerebral diseases – novel form of intercellular communication.<\/a> Kanninen K,\u00a0Malm T.<\/strong> 2016;132(21):1957-63.PMID:\u00a029190047\u00a0Review.<\/li>\n
  23. Immunomodulation by interleukin-33 is protective in stroke through modulation of inflammation.<\/a> Korhonen P, Kanninen KM, Lehtonen \u0160, Lemarchant S, Puttonen KA, Oksanen M, Dhungana H, Loppi S, Pollari E, Wojciechowski S, Kidin I, Garc\u00eda-Berrocoso T, Giralt D, Montaner J, Koistinaho J,\u00a0Malm T.<\/strong>Brain Behav Immun. 2015 Oct;49:322-36. doi: 10.1016\/j.bbi.2015.06.013. Epub 2015 Jun 22.PMID:\u00a026111431<\/li>\n
  24. Interleukin-33 treatment reduces secondary injury and improves functional recovery after contusion spinal cord injury.<\/a> Pomeshchik Y, Kidin I, Korhonen P, Savchenko E, Jaronen M, Lehtonen S, Wojciechowski S, Kanninen K, Koistinaho J,\u00a0Malm T.<\/strong>Brain Behav Immun. 2015 Feb;44:68-81. doi: 10.1016\/j.bbi.2014.08.002. Epub 2014 Aug 18.PMID:\u00a025153903<\/li>\n
  25. Complex regulation of acute and chronic neuroinflammatory responses in mouse models deficient for nuclear factor kappa B p50 subunit.<\/a> Rolova T, Puli L, Magga J, Dhungana H, Kanninen K, Wojciehowski S, Salminen A, Tanila H, Koistinaho J,\u00a0Malm T.<\/strong>Neurobiol Dis. 2014 Apr;64:16-29. doi: 10.1016\/j.nbd.2013.12.003. Epub 2013 Dec 15.PMID:\u00a024345324<\/li>\n
  26. Western-type diet modulates inflammatory responses and impairs functional outcome following permanent middle cerebral artery occlusion in aged mice expressing the human apolipoprotein E4 allele.<\/a> Dhungana H, Rolova T, Savchenko E, Wojciechowski S, Savolainen K, Ruotsalainen AK, Sullivan PM, Koistinaho J,\u00a0Malm T.<\/strong>J Neuroinflammation. 2013 Aug 20;10:102. doi: 10.1186\/1742-2094-10-102.PMID:\u00a023957944\u00a0Free PMC article.<\/strong><\/li>\n
  27. Brain environment and Alzheimer’s disease mutations affect the survival, migration and differentiation of neural progenitor cells.<\/a> Karkkainen V, Magga J, Koistinaho J,\u00a0Malm T.<\/strong>Curr Alzheimer Res. 2012 Nov;9(9):1030-42. doi: 10.2174\/156720512803569028.PMID:\u00a022950909<\/li>\n
  28. Targeting Glycogen Synthase Kinase-3\u03b2 for Therapeutic Benefit against Oxidative Stress in Alzheimer’s Disease: Involvement of the Nrf2-ARE Pathway.<\/a> Kanninen K, White AR, Koistinaho J,\u00a0Malm T.<\/strong>Int J Alzheimers Dis. 2011;2011:985085. doi: 10.4061\/2011\/985085. Epub 2011 May 2.PMID:\u00a021629716\u00a0Free PMC article.<\/strong><\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

    SELECTED PUBLICATIONS StellarPath: Hierarchical-vertical multi-omics classifier synergizes stable markers and interpretable similarity networks for patient profiling. Giudice L, Mohamed A,\u00a0Malm T.PLoS Comput Biol. 2024 Apr 12;20(4):e1012022. doi: 10.1371\/journal.pcbi.1012022. eCollection 2024 Apr.PMID:\u00a038607982\u00a0Free PMC article. ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling. Scoyni F, Sitnikova V, Giudice L, Korhonen P, Trevisan DM, Hernandez de […]<\/p>\n","protected":false},"author":326,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-142","page","type-page","status-publish","hentry"],"acf":[],"yoast_head":"\nPUBLICATIONS - Neuroinflammation Research Group<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/sites.uef.fi\/tarja-malm-group\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"PUBLICATIONS - Neuroinflammation Research Group\" \/>\n<meta property=\"og:description\" content=\"SELECTED PUBLICATIONS StellarPath: Hierarchical-vertical multi-omics classifier synergizes stable markers and interpretable similarity networks for patient profiling. Giudice L, Mohamed A,\u00a0Malm T.PLoS Comput Biol. 2024 Apr 12;20(4):e1012022. doi: 10.1371\/journal.pcbi.1012022. eCollection 2024 Apr.PMID:\u00a038607982\u00a0Free PMC article. ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling. 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Giudice L, Mohamed A,\u00a0Malm T.PLoS Comput Biol. 2024 Apr 12;20(4):e1012022. doi: 10.1371\/journal.pcbi.1012022. eCollection 2024 Apr.PMID:\u00a038607982\u00a0Free PMC article. ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling. 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