Image Analysis

Software Downloads

ZEN Lite is available for download from:

LAS X for Leica Thunder Imager 3D Tissue can be downloaded from:

FIJI open source software for image analysis:

QuPath an open source software for histological sample analysis

Analysis resources

Fiji scripts

Macro for extracting single tif files out of the lif project:

https://github.com/HGrobe/CTIU_Kuopio/blob/main/LIF_Extractor.ijm

Reading material and online resources for image analysis:

• “Introduction to Bioimage Analysis” by Pete Bankhead
  https://bioimagebook.github.io/index.html
  
• “Bioimage Data Analysis Workflows” by Kota Miura
  https://link.springer.com/book/10.1007/978-3-030-22386-1
  
• Online Tutorial for image analysis with FIJI:
  https://monashmicroimaging.github.io/gitbook-fiji-intermediate/chapter1.html
  
• YouTube Tutorial for image segmentation and filtering in FIJI
  https://www.youtube.com/watch?v=08SZnZBl4lM
  
  
  

If you need help with your analysis, don’t hesitate to reach out to us under:
[email protected]