Optical sensing and imaging

The group is a joint research group of the School of Computing and the Department of Physics and Mathematics. It belongs to the Center for Photonics Sciences. Group is also member of the Academy of Finland’s Flagship on Photonics Research and Innovation (PREIN).

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The group is currently focused on the design, modeling and fabrication of a range of surface-enhanced Raman spectroscopy substrates based on black silicon (bSi). We propose to sculpture the bSi surface enhanced with graphene and / or gold nanolayers in order to achieve SERS enhancement factor as high as 8 orders of magnitude. This finding makes the SERS-active bSi-based substrate suitable for a number of the environmental and / or biomedical applications when detecting analytes’ trace concentrations are required. Being biocompatible, the bSi/Au SERS-active substrate offers a unique opportunity to monitor the functional state of living cells using  proteins / lipids / DNA/ RNA  characteristic Raman bands as markers.

Highly uniform and reliable bSi based SERS substrates provide a pathway to the  sensitive and selective, scalable, and low-cost lab-on-a-chip SERS biosensors that can be integrated into silicon-based photonics device.

In research, the group actively collaborates with international partners from Center for Physical Sciences and Technology, Vilnius, Lithuania. 

Contact persons:

Prof. Polina Kuzhir
Prof. Yuri Svirko

Selected publications:

1. L. Golubewa, R. Karpicz, I. Matulaitiene, A. Selskis, D. Rutkauskas, A. Pushkarchuk, T. Khlopina, D. Michels, D. Lyakhov, T. Kulahava, A. Shah, Y. Svirko, and P. Kuzhir, “Surface-enhanced Raman spectroscopy of organic molecules and living cells with gold-plated black silicon”, ACS Appl. Mater. Interfaces 12, 50971 (2020).
2. L. Golubewa, H. Rehman, T. Kulahava, R. Karpicz, M. Baah, T. Kaplas, A. Shah, S. Malykhin, A. Obraztsov, D. Rutkauskas, M. Jankunec, I. Matulaitiene, A. Selskis, A. Denisov, Y. Svirko, and P. Kuzhir, “Macro-, micro- and nano-roughness of carbon-based interface with the brain cells: towards a versatile bio-sensing platform”, Sensors 20, 5028 (2020).
3. L. Golubewa, et. al., “Visualizing hypochlorous acid production by human neutrophils with fluorescent graphene quantum dots”, Nanotechnology 33 095101 (2022).
4. L. Golubewa, et. al., “Black Silicon: Breaking through the Everlasting Cost vs. Effectivity Trade-Off for SERS Substrates”, Materials 16, 1948 (2023).
5. L. Golubewa, et. al., “Stable and Reusable Lace-like Black Silicon Nanostructures Coated with Nanometer-Thick Gold Films for SERS-Based Sensing”, ACS Applied Nano Materials 6, 4770 (2023).

Keywords: 
Black silicon, surface-enhanced Raman spectroscopy, gold nanoparticles, graphene, biocompatibility, enhancement factor, small organic molecules, living cells 

Comparison of Raman spectra of 4-MBA monolayer on SiO₂/Au smooth substrate (a), of bulk 4-MBA (b), and SERS spectra of 4-MBA (c) and living rat glioma cell (d) on the bSi/Au substrate. The spectrum of a living cell was recorded in aqueous Hepes-buffer solution. Buffer spectrum was subtracted from living cells Raman spectra. The excitation wavelength is 785 nm.

Uniformity of bSi/Au SERS substrate. (a) – Top-down SEM image of bSi/Au substrate, inset gives 1×1 μm area. (b) – Map of the background-corrected Raman intensity. 1077 cm^-1 C–S stretch vibration peak, a 50× objective (NA 1.0) were used. The map resolution is 1 μm. 1,2,3 – separate 10×10 μm maps taken randomly from a 75×115 μm area. Inset gives a SERS spectrum of 4-MBA monolayer from 1×1 μm pixel.

Group currently performs theoretical modeling and experimental verification of using photonic materials of reduced dimensionality for combining medical diagnosing and treatment in vitro. This approach is often dubbed “theranostics”. 

Single wall carbon nanotubes were proved to be effective theranostic agent, suitable for both detection of the cancer cells and their treatment non-invasive for surrounded healthy cells though cold photoacoustic mechanism. 

Our ambition is to create and validate in vitro a simple, robust and scalable multimodal quantum theranostic agents – fluorescent nanodiamonds and single-crystalline diamond needles embedding color centers, and graphene and other 2D materials-based quantum dots – capable of monitoring the functional state of electrically active cells, i.e. neurons, and destroying cancer cells.  

In research, the group actively collaborates with international partners from Center for Physical Sciences and Technology, Vilnius, Lithuania; Ulm University/ Institute for Quantum Optics, Ulm, Germany; Tor Vergata University/Department of Physics, Rome, Italy; University of Warsaw/ Quantum Optics Lab, Warsaw, Poland; Institute of Physics, National Academy of Science, Minsk, Belarus 

Contact persons:

Prof. Polina Kuzhir
Prof. Yuri Svirko
Dr. Sergei Malykhin
Prof. Alexander Obraztsov

Selected publications:

1. L. Golubewa, I. Timoshchenko, O. Romanov, R. Karpicz, T. Kulahava, D. Rutkauskas, M. Shuba, A. Dementjev, Y. Svirko, and P. Kuzhir, “Single-walled carbon nanotubes as a photo-thermo-acoustic cancer theranostic agent: theory and proof of the concept experiment”, Sci. Rep. 10, 22174 (2020).
2. L. Golubewa, et. al., “Rapid and delayed effects of single-walled carbon nanotubes in glioma cells”, Nanotechnology 32 505103 (2021).
3. L. Golubewa, et. al., “All-Optical Thermometry with NV and SiV Color Centers in Biocompatible Diamond Microneedles”, Adv. Optical Mater. 10, 2200631 (2022).
4. Y. Padrez, et. al., “Quantitative and qualitative analysis of pulmonary arterial hypertension fibrosis using wide-field second harmonic generation microscopy”, Scientific Reports 12, 7330 (2022).
5. N. Belko, et. al., “Hysteresis and Stochastic Fluorescence by Aggregated Ensembles of Graphene Quantum Dots”, J. Phys. Chem. C 126, 10469 (2022).
6. Y. Padrez, et. al. “Nanodiamond surface as a photoluminescent pH sensor”, Nanotechnology 34 195702 (2023).
7. M. Quarshie, et. al., “Nano- and micro-crystalline diamond film structuring with electron beam lithography mask”, Nanotechnology 35 155301 (2024).

Keywords: 
Nanodiamonds, color center, carbon nanotube, graphene quantum dot, theranostic agent 

Numerical simulation of the interaction of laser radiation with the SWCNT agglomerate embedded into the living cell. Contour maps of the a temperature increase and b negative pressure in the SWCNT agglomerate of 1 µm aggregated inside the glioma cell on the pulse duration/intensity plane. c Isotherms at ΔT = 20 K and ΔT = 60 K, respectively, and isobar at ΔP = – 0.7 MPa. The star corresponds to the experimental conditions. 

Photo-induced SWCNT-mediated destruction of glioma cells by NIR pico-second pulsed irradiation. a-c Bare C6 glioma cells; d-f C6 glioma cells with accumulated micron-sized SWCNT agglomerates, g-i C6 glioma cells in the presence of the SWCNTs suspension in the extracellular medium. a, d, g bright-field images superimposed with PI fluorescence images before irradiation; b, e, h CARS images; c, f, i bright-field images superimposed with PI fluorescence images after irradiation with 10 ps laser pulses (910.5/1064 nm, 106 W/cm2) for 7 min. 

Unique features of atomic-sized objects or defects allow optical quantum sensing and bioimaging. We investigate diamond nanoparticles, films and needles enriched with various types of color centers as well as quantum dots for these purposes. Sensing based on all-optical and spin approaches as well as their combination is employed. Applying nanofabrication techniques to fluorescence diamonds we create and characterize sensing matrixes and chips.

Scheme of spin-based sensing with NV centers

Publications:

10.1002/adom.202200631
10.1088/1361-6528/ad18e9

Contact persons:

Prof. Polina Kuzhir
Dr. Sergei Malykhin
Prof. Alexander Obraztsov

The group is part of Computational Physics and Inverse Problems research at the Department of Technical Physics. It belongs to the Center for Photonics Sciences. The group is also a member of the Academy of Finland’s Flagship on Photonics Research and Innovation (PREIN) and Centre of Excellence in Inverse Modelling and Imaging. Furthermore, it holds an ERC Consolidator grant.

The research topics of the group include computational inverse problems and modelling with special interests in quantitative imaging, Bayesian inverse problems and uncertainty quantification. Furthermore, the group has strong expertise on computational modelling of light and ultrasound propagation. The group is especially interested in development of light, ultrasound and coupled physics based imaging modalities and therapy.

We have a strong international collaboration network with partners, for example, in the University College London, Politecnico di Milano and Sunnybrook Research Institute in Toronto.

Laboratory

Biomedical Optical Imaging and Ultrasound Laboratory (OPUS) is located at the Department of Technical Physics, Kuopio campus. The laboratory is equipped to perform versatile and demanding ultrasonic measurements. The facilities can be used to tune and calibrate commercial and prototype-level transducers and to measure acoustic pressure fields. The laboratory premises and equipment are available for in vitro, ex vivo, and in vivo experiments. Furthermore, the laboratory has facilities for diffuse optical tomography and photoacoustic tomography experiments and research. These can be applied for different measurement scenarios and they can be applied with e.g. biological samples and phantom targets.

The laboratory includes, for example, the following devices:

• Two motorized and one manual 3D position systems, μm scale movements. Motorized positioners are under computer control.
• Calibrated hydrophones for MHz range ultrasonics
• Transducer from 0.5 MHz up to approximately 12 MHz
• Ultrasound pulser and receiver electronics
• RF generators and amplifiers
• Computer controlled radiation force balance with forwarded/reflected electric power measurement
• Schlieren system for 0.8 to 80 MHz frequency bandwidth
• Laser vibrometer for surface velocity and displacement measurements up to 10 MHz
• Nd:YAG – OPO laser with fiber optic coupling. Optical energies up to several hundreds of millijoules, wavelength range from 660 to 2600 nm, pulse duration ≈ 5 ns.
• Sensors and meters for optical energy measurement from nanojoules to joules
• Optical detectors for pulse duration measurement from < 1 ns
• High-definition oscilloscope with 2.5 GHz bandwidth
• Commercial and in-house built drive circuits for LEDs and laser diodes

See the full list of devices.

Open software

We have an open source optical Monte Carlo code and MATLAB toolbox ValoMC for simulating light transport in scattering medium.

Group members

• Professor, group leader Tanja Tarvainen
• Postdoctoral researcher Jarkko Leskinen
• Postdoctoral researcher Meghdoot Mozumder
• Postdoctoral researcher Konstantin Tamarov
• Postdoctoral researcher Niko Hänninen
• Postdoctoral researcher Teemu Sahlström
• Early stage researcher Jonna Kangasniemi
• Early stage researcher Jarjish Rahaman

List of publications

See the list of publications.

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